Tag Archives: Python

The most interesting machine learning AMAs on Reddit

It is very clear that Reddit is part of the rather wild zone of the internet. But especially for practical questions, Reddit can be very useful, and even more so for anything connected to the internet or computer technology, like machine … Continue reading

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How deconvolution of calcium data degrades with noise

How does the noisiness of the recorded calcium data affect the performance of spiking-inferring deconvolution algorithms? I cannot offer a rigorous treatment of this question, but some intuitive examples. The short answer: If a calcium transient is not visible at … Continue reading

Posted in Calcium Imaging, Data analysis, electrophysiology, Imaging, machine learning, Neuronal activity | Tagged , , , , | Leave a comment

A convolutional network to deconvolve calcium traces, living in an embedding space of statistical properties

As mentioned before (here and here), the spikefinder competition was set up earlier this year to compare algorithms that infer spiking probabilities from calcium imaging data. Together with Stephan Gerhard, a PostDoc in our lab, I submitted an algorithm based on convolutional networks. Looking … Continue reading

Posted in Calcium Imaging, Data analysis, electrophysiology, Imaging, machine learning, Neuronal activity | Tagged , , , , | Leave a comment